Gilles Carpentier Research Web Site: Computer Image Analysis
Image analysis tools in biology and biochemistry using ImageJ

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Wednesday 21 October 2015, by Gilles Carpentier

  Table of contents  

  Slide show:

NiceCells Neuron - before & after deconvolution Nice-neuron-synapses Neuron synaptic area detection - user selection Neuron synaptic area detection Human macrophage derived monocytes-PH Human macrophage derived monocytes-PH-ROS-DNA Human macrophage derived monocytes-PH-ROS-DNA-An HUVEC lens free microscopy - raw  HUVEC lens free microscopy - reconstructed HUVEC lens free microscopy-analyzed HUVEC Phase Contrast Huvec Phase Contrast + Analysis HUVEC Fluo HUVEC Fluo + Analysis HUVEC Lensfree Microscopy HUVEC Lensfree Microscopy + Analysis HistoMuscle-4Channels HistoMuscle-3Channels Microcosme Rat myotube culture Protein arrays Analyzed protein array Myoblast - LSM transmission Myoblast - LSM transmission-Deblured Myoblast - LSM transmission-Deblured-fft Rat sciatic nerve Rat sciatic nerve - deblurred Whole mouse retina Whole mouse retina - analysis Whole mouse retina - modeled vasculature Mouse retina sample Mouse retina analyzed sample. Initial image © - Gilles Carpentier - Legend :  Simple environment. Initial image. Microsphere detection © - Gilles Carpentier - Legend :  Simple environment. Microsphere edge detection (red). Anchorage detection © - Gilles Carpentier - Legend :  Simple environment. Pseudo microvascular  anchorage detection (mauve). Initial image © - Gilles Carpentier - Legend :  Complex environment - initial image. Image analysis © - Gilles Carpentier - Legend :   Complex environment - Detection of microsphere (red) and pseudo vascular tree; segments (magenta), branches (green), nodes (red dots), junctions (blue) and anchorages (mauve). Map of objects ©- Gilles Carpentier - Legend :  Complex environment - Maps of quantified vectorial objects. Microsphere (red dots) and pseudo vascular tree; segments (Magenta), branches (green), nodes (red), junctions (blue) and anchorage (mauve). Raw RTOVI image © - Gilles Carpentier - Legend : Initial image coming from a RTOVI recorded movie Segmented RTOVI image ©- Gilles Carpentier - Legend : Segmented image coming from a RTOVI recorded movie Analyzed microvascularity  © - Gilles Carpentier - Legend : Analyzed microvascularity organisation of an image coming from a RTOVI recorded movie
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logoij ImageJ (http://rsb.info.nih.gov/ij/) is a public domain Java image processing program inspired by NIH Image for the Macintosh. It runs, either as an online applet or as a downloadable application, on any computer with a Java 1.1 or later virtual machine. Downloadable distributions are available for Windows, Mac OS, Mac OS X and Linux. The author, Wayne Rasband (wayne@codon.nih.gov), is at the Research Services Branch, National Institute of Mental Health, Bethesda, Maryland, USA.
Gilles Carpentier, Faculte des Sciences et Technologie,
Universite Paris Est Creteil Val-de-Marne, France.

Special thanks to Alessandra Albano for the English correction of these sites.
Computer Data Acquisition
for Biochemistry Practice Works

Image.Bio.Methods@free.fr
Image analysis tools in biology
and biochemistry using ImageJ