Gilles Carpentier Research Web Site: Computer Image Analysis

Protein Array Analyzer for ImageJ - What's New

Gilles Carpentier — 2023-07-26T13:18:00Z

26-07-2023 Citations
More than 160 citations in a wide range of journals (Nature Communications, Nature-Scientific Reports, Science Advancec, FASEB (…)).
Protein Array Analyzer, installation and documentation, at this link.
27-09-2018 Update 1.1.c
Current upgrade content :
More than thirty articles citing this tool.
Video tutorials are now available through HTML5.
Fixed a bug with the "autosize dot function" appeared with the 1.51 version of ImageJ which cause exit of analysis. (...)

- News

Sort Selections in Overlay - Application

Gilles Carpentier — 2022-01-20T14:11:00Z

The « Sort Selections in Overlays » macro is an example of handling vectorial objects - named overlays in ImageJ - by using single or composite selection of different nature. This brief page gives examples of use, and an application in cellular neurology.
Description: Get overlays elements from any kind of selection (line, freehand etc...) with the options of inclusion, exclusion and intersection (using exclusion removes selected overlays). It allows sorting of the selected overlays elements (...)

- Tool Sets and Macros

Multi-Channels Image and Stack Helper - What's New

Gilles Carpentier — 2018-09-26T12:25:00Z

28-09-2018 Update 1.0.c
Current upgrade content : Fixed the bad link to the documentation. Documentation and video tutorials has been revised and are now available through HTML5. Added a web page link "What's New" in the "On Line Documentation & Demo Menu".
Update the Multi-Channels Image and Stack Helper :
Multi-Channels Image and Stack Helper, installation and documentation, at this (...)

- News

More than 50,000 visitors

Gilles Carpentier — 2013-04-05T13:26:43Z

Image.Bio.Methods website counts now more than 50,000 visitors as defined by ClustrMaps.
Over the last three years, the top five represented countries are United States, France, Germany, United Kingdom and Japan. The three first states of USA (California, Massachusetts and NewYork) represent more than Japan and United Kingdom together. Region Ile de France website visitors counts, represent the same than California and Massachusetts added. This might be a representative sampling of the (...)

- Website Audience

Angiogenesis Analyzer for ImageJ

Gilles Carpentier — 2012-10-20T13:51:00Z

This tool was presented at the poster session of the ImageJ User and Developer Conference 2012
2020 - Angiogenesis Analyzer for ImageJ — A comparative morphometric analysis of “Endothelial Tube Formation Assay” and “Fibrin Bead Assay”. Description:
The "Angiogenesis Analyzer" allows analysis of cellular networks. Typically, it can detect and analyze the pseudo vascular organization of endothelial cells cultured in gel medium.
Among the tools used to evaluate the anti-angiogenesis (...)

- Tool Sets and Macros

ImageJ User and Developer Conference 2012

Gilles Carpentier — 2012-09-10T09:28:54Z

The ImageJ User and Developer Conference 2012.
Angiogenesis Analyzer for ImageJ. Documentation. (...)

- Conferences

Multi-Channels Image and Stack Helper

Gilles Carpentier — 2012-04-06T11:57:22Z

Description:
The "Multi-Channels Image and Stack Helper" allows a fast and simple 16 bit multidimensional level adjusting.
This toolset proposes a regroupment of ImageJ functions useful to make some easy image and multidimensional stacks visualisations. It also proposes some automatic level adjustment options, and some convenient editing functionalities, especially for documents with a bit depth greater than 8.
The "Multi-Channels Image and Stack Helper", was programmed in ImageJ's (...)

- Tool Sets and Macros

Zoom in Images and Stacks

Gilles Carpentier — 2011-01-12T17:31:52Z

Description:
This macro tool allows to make zoomed insets in images, stacks, avi movies opened as stacks, and other movies opened using QuickTime plugins.
Inset in an image :
- Make a rectangular selection of the area to zoom.
- Choose the color of the rectangles labelling using the color picker.
- Click on the "Zoom in Images and Movies" tool icon.
- Choose the settings in the box.
- Choose the destination for the zoomed area by moving the "rectangle cursor".
- Click to apply (...)

- Tool Sets and Macros

Protein Array Analyzer for ImageJ

Gilles Carpentier — 2010-10-15T11:47:31Z

This tool has been presented at the poster session at the ImageJ User and Developer Conference 2010
Description:
Protein array is used to analyze protein expressions by screening simultaneously several protein-molecule interactions such as protein-protein and protein-DNA interactions. In most cases, the detection of interactions leads to an image containing numerous lines of spots that will be analyzed by comparing tables of intensity values. To describe the observed different (...)

- Tool Sets and Macros

ImageJ User and Developer Conference 2010

Gilles Carpentier — 2010-04-30T15:07:06Z

Link to archived events of the ImageJ User and Developer Conference 2010. This link contains the programme, pictures, support material and much more.
Protein Array Analyzer for ImageJ. Documentation.
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- Conferences