Gilles Carpentier Research Web Site: Computer Image Analysis
Image analysis tools in biology and biochemistry using ImageJ

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Collaborations

Wednesday 19 May 2021, by Gilles Carpentier


- Elisabeth VAGANAY et Florence RUGGIERO, Matrix Biology and Pathology, Institut de Génomique Fonctionnelle de Lyon, ENS de lyon, Université de Lyon, CNRS UMR 5242, France. [1].


- Dr. Richard Cook and Pedro Bastos, Dental Institute, Guy’s Hospital, King’s College London, UK. [2].

- Rachna Mirchandani, Savini Thrikawala, Department of Biology and Biochemistry, Center for Nuclear Receptors and Cell Signaling, University of Houston, Houston, TX, USA, and Dr. Maria Bondesson Intelligent Systems Engineering, Indiana University, Bloomington, IN, USA.


- Dr. Fabien Chevalier, Dr. Ségolène Ferratge and Dr. Georges Uzan. INSERM U1197, Hôpital Paul Brousse, Villejuif. France. [3] [4] [5].


- Iglika Christova, plasticienne et doctorante en art et sciences de l’art, Institut ACTE, UMR CNRS 8218, Université Paris 1 Sorbonne. [6] [7].


- Dr Cédric ALLIER. CEA-Leti - MINATEC Campus, Grenoble, France. [8].


- Geoffrey Estaban. IPRASENSE, Cap Alpha, Clapiers, France. www.iprasense.com [9].


- Dacha Gholobova, Lieselot Decroix and Prof. dr. ir. Lieven Thorrez. Dept. Development and Regeneration @Kulak, KU Leuven, Kortrijk. Belgium. [10] [11]


- Dr. Arvind P. Pathak and Malvi Hemani, Depts. of Radiology and Oncology, The Johns Hopkins University School of Medicine, Baltimore. USA. Web: www.pathaklab.org. [12].


- Dr Sarah Berndt and Prof Muriel Cuendet. Pharmacognosie, Phytochimie et produits naturels bioactifs. Section des Sciences Pharmaceutiques. Université de Genève, Université de Lausanne Sciences II. Switzerland. [13] [14] [15] [16] [17] [18].


- Dr. Valeria Samarelli and Marco Arese, Associate Professor of Biochemistry, Department of Oncological Sciences - University of Turin - School of Medecine - Institute for Cancer Research and Treatment (IRCC). Italy. [19].

Footnotes

[1Jia T, Vaganay E, Carpentier G, Coudert P, Guzman-Gonzales V, Manuel R, Eymin B, Coll JL, Ruggiero F. A collagen Vα1-derived fragment inhibits FGF-2 induced-angiogenesis by modulating endothelial cells plasticity through its heparin-binding site. Matrix Biol. 2020 Dec;94:18-30. doi: 10.1016/j.matbio.2020.07.001. Abstract.

[2Bastos P, Carpentier G, Patel V, Papy-Garcia D, Watson T, Cook R. Real-Time Optical Vascular Imaging, a new method for the diagnosis and monitoring of oral diseases.
. J Microsc. 2020 Oct 29. doi: 10.1111/jmi.12975. Online ahead of print. Abstract.


[3- Carpentier G, Berndt S, Ferratge S, Rasband W, Cuendet M, Uzan G, Albanese P. Angiogenesis Analyzer for ImageJ - A comparative morphometric analysis of "Endothelial Tube Formation Assay" and "Fibrin Bead Assay". Sci Rep. 2020 Jul 14;10(1):11568. doi: 10.1038/s41598-020-67289-8. Abstract.

[4Ferratge S, Ha G, Carpentier G, Arouche N, Bascetin R, Muller L, Germain S, Uzan G. Initial clonogenic potential of human endothelial progenitor cells is predictive of their further properties and establishes a functional hierarchy related to immaturity. Stem Cell Res. 2017 May;21:148-159. Abstract.

[5Chevalier F, Lavergne M, Negroni E, Ferratge S, Carpentier G, Gilbert-Sirieix M, Siñeriz F, Uzan G, Albanese P. Glycosaminoglycan mimetic improves enrichment and cell functions of human endothelial progenitor cell colonies. Stem Cell Res. May;12(3):703-15, 2014. Abstract.

[6Exhibition « Micro-Poétique ». Espace Jour et Nuit Culture from the 2 - 6 may 2017, 9 place Saint Michel 75006 Paris.

[7Exhibition « H2O », labeled COP 22, 5 to 28 January 2017 at the Graphem gallery in Paris.

[8Allier C, Esteban G, Carpentier G, Van Der Sanden B, Vinjimore Kesavan S, Coutard J-G, Bordy T, Momey F, Herve L, Hamard L, Di Natale C, Wion D, Dinten J-M. Video Lensfree Microscopy for the Quantification of Endothelial Cellular Network Formation. 6ème Congrès de la Société Française d’Angiogenèse. Paris Collège de France – Septembre 24-25, 2015.

[9Allier C, Esteban G, Carpentier G, Van Der Sanden B, Vinjimore Kesavan S, Coutard J-G, Bordy T, Momey F, Herve L, Hamard L, Di Natale C, Wion D, Dinten J-M. Video Lensfree Microscopy for the Quantification of Endothelial Cellular Network Formation. 6ème Congrès de la Société Française d’Angiogenèse. Paris Collège de France – Septembre 24-25, 2015.

[10- Gholobova D, Terrie L, Mackova K, Desender L, Carpentier G, Gerard M, Hympanova L, Deprest J, Thorrez L. Functional evaluation of prevascularization in one-stage versus two-stage tissue engineering approach of human bio-artificial muscle. Biofabrication. 2020 Jun 12;12(3):035021. doi: 10.1088/1758-5090/ab8f36. PMID: 32357347. Abstract.

[11Gholobova D, Decroix L, Van Muylder V, Desender L, Gerard M, Carpentier G, Vandenburgh H, Thorrez L. Endothelial Network Formation Within Human Tissue-Engineered Skeletal Muscle. Tissue Eng Part A. 2015 Sep 1. Abstract.

[12Fortenberry YM, Brandal SM, Carpentier G, Hemani M, Pathak AP. Intracellular Expression of PAI-1 Specific Aptamers Alters Breast Cancer Cell Migration, Invasion and Angiogenesis. PLoS One. 2016 Oct 18;11(10):e0164288. Abstract.

[13- Carpentier G, Berndt S, Ferratge S, Rasband W, Cuendet M, Uzan G, Albanese P. Angiogenesis Analyzer for ImageJ - A comparative morphometric analysis of "Endothelial Tube Formation Assay" and "Fibrin Bead Assay". Sci Rep. 2020 Jul 14;10(1):11568. doi: 10.1038/s41598-020-67289-8. Abstract.

[14Berndt S, Carpentier G, Turzi A, Borlat F, Cuendet M, Modarressi A. Angiogenesis Is Differentially Modulated by Platelet-Derived Products. Biomedicines. 2021 Mar 4;9(3):251. doi: 10.3390/biomedicines9030251. Abstract.

[15Sakr OS, Berndt S, Carpentier G, Cuendet M, Jordan O, Borchard G. Arming embolic beads with anti-VEGF antibodies and controlling their release using LbL technology. J Control Release. 2016 Feb 28;224:199-207. Abstract.

[16Queiroz MMF, Monteillier A, Berndt S, Marcourt L, Franco ES, Carpentier G, Nejad Ebrahimi S, Cuendet M, Bolzani VDS, Maia MBS, Queiroz EF, Wolfender JL. NF-κB and Angiogenesis Inhibitors from the Aerial Parts of Chresta martii. J Nat Prod. 2018 Aug 24;81(8):1769-1776. Abstract.

[17Issa ME, Berndt S, Carpentier G, Pezzuto JM, Cuendet M. Bruceantin inhibits multiple myeloma cancer stem cell proliferation. Cancer Biol There. 2016 Jul 19:0. Abstract.

[18Berndt S, Issa ME, Carpentier G, Cuendet M. A Bivalent Role of Genistein in Sprouting Angiogenesis. Planta Med. 2018 Mar 14. doi: 10.1055/a-0587-5991. Abstract.

[19Samarelli AV, Riccitelli E, Bizzozero L, Nunes Silveira T, Seano G, Pergolizzi M, Vitagliano G, Cascone I, Carpentier G, Bottos A, Primo L, Bussolino F, Arese M. Neuroligin 1 induces blood vessels maturation by cooperating with the α6 integrin. J Biol Chem. May 23. pii: jbc.M113.530972. 2014. Abstract.

logoij ImageJ (http://rsb.info.nih.gov/ij/) is a public domain Java image processing program inspired by NIH Image for the Macintosh. It runs, either as an online applet or as a downloadable application, on any computer with a Java 1.1 or later virtual machine. Downloadable distributions are available for Windows, Mac OS, Mac OS X and Linux. The author, Wayne Rasband (wayne@codon.nih.gov), is at the Research Services Branch, National Institute of Mental Health, Bethesda, Maryland, USA.
Gilles Carpentier, Faculte des Sciences et Technologie,
Universite Paris Est Creteil Val-de-Marne, France.

Special thanks to Alessandra Albano for the English correction of these sites.
Computer Data Acquisition
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Image analysis tools in biology
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