Gilles Carpentier Research Web Site: Computer Image Analysis
Image analysis tools in biology and biochemistry using ImageJ

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About the Author

Friday 16 October 2015, by Gilles Carpentier

  Table of contents  


- Carpentier G, Berndt S, Ferratge S, Rasband W, Cuendet M, Uzan G, Albanese P. Angiogenesis Analyzer for ImageJ - A comparative morphometric analysis of "Endothelial Tube Formation Assay" and "Fibrin Bead Assay". Sci Rep. 2020 Jul 14;10(1):11568. doi: 10.1038/s41598-020-67289-8. Abstract.

- Samain R, Brunel A, Douché T, Fanjul M, Cassant-Sourdy S, Rochotte J, Cros J, Neuzillet C, Raffenne J, Duluc C, Perraud A, Nigri J, Gigoux V, Bieche I, Ponzo M, Carpentier G, Cascone I, Tomasini R, Schmid HA, Mathonnet M, Nicolle R, Bousquet MP, Martineau Y, Pyronnet S, Jean C, Bousquet C. Pharmacologic Normalization of Pancreatic Cancer-Associated Fibroblast Secretome Impairs Prometastatic Cross-Talk With Macrophages. Cell Mol Gastroenterol Hepatol. 2021;11(5):1405-1436. doi: 10.1016/j.jcmgh.2021.01.008. Epub 2021 Jan 20. Abstract.

- Berndt S, Carpentier G, Turzi A, Borlat F, Cuendet M, Modarressi A. Angiogenesis Is Differentially Modulated by Platelet-Derived Products. Biomedicines. 2021 Mar 4;9(3):251. doi: 10.3390/biomedicines9030251. Abstract.

- Murugeswari P, Firoz A, Murali S, Vinekar A, Krishna L, Anandula VR, Jeyabalan N, Chevour P, Jayadev C, Shetty R, Carpentier G, Kumaramanickavel G, Ghosh A, Das D. Vitamin-D3 (α-1, 25(OH) 2D3) Protects Retinal Pigment Epithelium From Hyperoxic Insults. Invest Ophthalmol Vis Sci. 2020 Feb 7;61(2):4. doi: 10.1167/iovs.61.2.4. Abstract.

- Gholobova D, Terrie L, Mackova K, Desender L, Carpentier G, Gerard M, Hympanova L, Deprest J, Thorrez L. Functional evaluation of prevascularization in one-stage versus two-stage tissue engineering approach of human bio-artificial muscle. Biofabrication. 2020 Jun 12;12(3):035021. doi: 10.1088/1758-5090/ab8f36. PMID: 32357347. Abstract.

- Jia T, Vaganay E, Carpentier G, Coudert P, Guzman-Gonzales V, Manuel R, Eymin B, Coll JL, Ruggiero F. A collagen Vα1-derived fragment inhibits FGF-2 induced-angiogenesis by modulating endothelial cells plasticity through its heparin-binding site. Matrix Biol. 2020 Dec;94:18-30. doi: 10.1016/j.matbio.2020.07.001. Abstract.

- Bastos P, Carpentier G, Patel V, Papy-Garcia D, Watson T, Cook R. Real-Time Optical Vascular Imaging, a new method for the diagnosis and monitoring of oral diseases.
. J Microsc. 2020 Oct 29. doi: 10.1111/jmi.12975. Online ahead of print. Abstract.

- Maïza A, Sidahmed-Adrar N, Michel PP, Carpentier G, Habert D, Dalle C, Redouane W, Hamza M, van Kuppevelt TH, Ouidja MO, Courty J, Chantepie S, Papy-Garcia D, Stettler O. 3-O-sulfated heparan sulfate interactors target synaptic adhesion molecules from neonatal mouse brain and inhibit neural activity and synaptogenesis in vitro. Sci Rep. 2020 Nov 5;10(1):19114. doi: 10.1038/s41598-020-76030-4. Abstract.

- Cossutta M, Darche M, Carpentier G, Houppe C, Ponzo M, Raineri F, Vallée B, Gilles ME, Villain D, Picard E, Casari C, Denis C, Paques M, Courty J, Cascone I. Weibel-Palade Bodies Orchestrate Pericytes During Angiogenesis. Arterioscler Thromb Vasc Biol. 2019 Sep;39(9):1843-1858. doi: 10.1161/ATVBAHA.119.313021. Epub 2019 Jul 18. Abstract.

- Huynh MB, Ouidja MO, Chantepie S, Carpentier G, Maïza A, Zhang G, Vilares J, Raisman-Vozari R, Papy-Garcia D. Glycosaminoglycans from Alzheimer’s disease hippocampus have altered capacities to bind and regulate growth factors activities and to bind tau. PLoS One. 2019 Jan 4;14(1):e0209573. Abstract.

- Berndt S, Issa ME, Carpentier G, Cuendet M. A Bivalent Role of Genistein in Sprouting Angiogenesis. Planta Med. 2018 Jul;84(9-10):653-66. Abstract.

- Queiroz MMF, Monteillier A, Berndt S, Marcourt L, Franco ES, Carpentier G, Nejad Ebrahimi S, Cuendet M, Bolzani VDS, Maia MBS, Queiroz EF, Wolfender JL. NF-κB and Angiogenesis Inhibitors from the Aerial Parts of Chresta martii. J Nat Prod. 2018 Aug 24;81(8):1769-1776. Abstract.

- Soltani A, Lebrun S, Carpentier G, Zunino G, Chantepie S, Maïza A, Bozzi Y, Desnos C, Darchen F, Stettler OIncreased signaling by the autism-related Engrailed-2 protein enhances dendritic branching and spine density, alters synaptic structural matching, and exaggerates protein synthesis. PLoS One. 2017 Aug 15;12(8). Abstract.

- Ferratge S, Ha G, Carpentier G, Arouche N, Bascetin R, Muller L, Germain S, Uzan G. Initial clonogenic potential of human endothelial progenitor cells is predictive of their further properties and establishes a functional hierarchy related to immaturity. Stem Cell Res. 2017 May;21:148-159. Abstract.

- Gilles ME, Maione F, Cossutta M, Carpentier G, Caruana L, Di Maria S, Houppe C, Destouches D, Shchors K, Prochasson C, Mongelard F, Lamba S, Bardelli A, Bouvet P, Couvelard A, Courty J, Giraudo E, Cascone I. Nucleolin targeting impairs the progression of pancreatic cancer and promotes the normalization of tumor vasculature. Cancer Res. 2016 Dec 15;76(24):7181-7193. Abstract.

- Fortenberry YM, Brandal SM, Carpentier G, Hemani M, Pathak AP. Intracellular Expression of PAI-1 Specific Aptamers Alters Breast Cancer Cell Migration, Invasion and Angiogenesis. PLoS One. 2016 Oct 18;11(10):e0164288. Abstract.

- Issa ME, Berndt S, Carpentier G, Pezzuto JM, Cuendet M. Bruceantin inhibits multiple myeloma cancer stem cell proliferation. Cancer Biol There. 2016 Sep;17(9):966-75. Abstract.

- Destouches D, Sader M, Terry S, Marchand C, Maillé P, Soyeux P, Carpentier G, Semprez F, Céraline J, Allory Y, Courty J, De La Taille A, Vacherot F. Implication of NPM1 phosphorylation and preclinical evaluation of the nucleoprotein antagonist N6L in prostate cancer. Oncotarget. 2016 Oct 25;7(43):69397-69411. Abstract.

- Sakr OS, Berndt S, Carpentier G, Cuendet M, Jordan O, Borchard G. Arming embolic beads with anti-VEGF antibodies and controlling their release using LbL technology. J Control Release. 2016 Jan 11;224:199-207. Abstract.

- Elahouel R, Blanc C, Carpentier G, Frechault S, Cascone I, Destouches D, Delbé J, Courty J, Hamma-Kourbali Y. Pleiotrophin Exerts Its Migration and Invasion Effect through the Neuropilin-1 Pathway. Neoplasia. 2015 Aug;17(8):613-24. Abstract.

- Sader M, Couleaud P, Carpentier G, Gilles ME, Bousserrhine N, et al. (2015) Functionalization of Iron Oxide Magnetic Nanoparticles with the Multivalent Pseudopeptide N6l for Breast Tumor Targeting. 2015. J Nanomed Nanotechnol 6:299. Article.

- Gholobova D, Decroix L, Van Muylder V, Desender L, Gerard M, Carpentier G, Vandenburgh H, Thorrez L. Endothelial Network Formation Within Human Tissue-Engineered Skeletal Muscle. Tissue Eng Part A. 2015 Sep 1. Abstract.

- Hermanns M.I., Kasper J., Unger R.E., Carpentier G., Roggen E.L, and Kirkpatrick C.J. Assessment of respiratory sensitizers: Cytokine responses in a 3D alveolo-capillary barrier model in vitro. Advanced Biomaterials and Devices in Medicine 2 (2015) 1-9. Article.

- Dos Santos C, Blanc C, Elahouel R, Prescott M, Carpentier G, Ori A, Courty J, Hamma-Kourbali Y, Fernig DG, Delbé J. Proliferation and migration activities of fibroblast growth factor-2 in endothelial cells are modulated by its direct interaction with heparin affin regulatory peptide. Biochimie. 2014 Dec;107 Pt B:350-7. Abstract.

- Samarelli AV, Riccitelli E, Bizzozero L, Nunes Silveira T, Seano G, Pergolizzi M, Vitagliano G, Cascone I, Carpentier G, Bottos A, Primo L, Bussolino F, Arese M. Neuroligin 1 induces blood vessels maturation by cooperating with the α6 integrin. J Biol Chem. 2014 May 23. Abstract.

- Chevalier F, Lavergne M, Negroni E, Ferratge S, Carpentier G, Gilbert-Sirieix M, Siñeriz F, Uzan G, Albanese P. Glycosaminoglycan mimetic improves enrichment and cell functions of human endothelial progenitor cell colonies. Stem Cell Res. 2014 May;12(3):703-15. Abstract.

- Attia M, Scott A, Carpentier G, Lian O, Van Kuppevelt T, Gossard C, Papy-Garcia D, Tassoni MC, Martelly I. Greater glycosaminoglycan content in human patellar tendon biopsies is associated with more pain and a lower VISA score. Br J Sports Med. 2013 Oct 6. doi: 10.1136/bjsports-2013-092633. Abstract.

- Frescaline G, Bouderlique T, Mansoor L, Carpentier G, Baroukh B, Sineriz F, Trouillas M, Saffar JL, Courty J, Lataillade JJ, Papy-Garcia D, Albanese P. Glycosaminoglycan mimetic associated to human mesenchymal stem cell-based scaffolds inhibit ectopic bone formation, but induce angiogenesis in vivo. Tissue Eng. Part A. 2013 Jul;19(13-14):1641-53. Abstract.

- Destouches D, Huet E, Sader M, Frechault S, Carpentier G, Ayoul F, Briand JP, Menashi S, Courty J. Multivalent Pseudopeptides Targeting Cell Surface Nucleoproteins Inhibit Cancer Cell Invasion through Tissue Inhibitor of Metalloproteinases 3 (TIMP-3) Release. 2012. J Biol Chem. 287(52):43685-93. Abstract.

- Carpentier G, Martinelli M, Courty J and Cascone I. Angiogenesis Analyzer. 2012. 4th ImageJ User and Developer Conference proceedings. ISBN: 2-919941-18-6 : 198-201. Abstract.

- van Zoggel H, Carpentier G, Dos Santos C, Hamma-Kourbali Y, Courty J, Amiche M, Delbé J. Antitumor and angiostatic activities of the antimicrobial peptide dermaseptin B2. 2012. PLoS One. 7(9):e44351. Abstract.

- Morin C, Roumegous A, Carpentier G, Barbier-Chassefière V, Garrigue-Antar L, Caredda S, Courty J. Modulation of inflammation by Cicaderma ointment accelerates skin wound healing. 2012 J Pharmacol Exp Ther. 343(1):115-24. Abstract.

- Huynh MB, Morin C, Carpentier G, Garcia-Filipe S, Talhas-Perret S, Barbier-Chassefière V, van Kuppevelt TH, Martelly I, Albanese P, Papy-Garcia D. Age-related changes in rat myocardium involve altered capacities of glycosaminoglycans to potentiate growth factor functions and heparan sulfate-altered sulfation. 2012. J Biol Chem. 287(14):11363-73. Abstract.

- Huynh MB, Villares J, Díaz JE, Christiaans S, Carpentier G, Ouidja MO, Sissoeff L, Raisman-Vozari R, Papy-Garcia D. Glycosaminoglycans from aged human hippocampus have altered capacities to regulate trophic factors activities but not Aβ42 peptide toxicity. 2012. Neurobiol Aging. 33(5):1005.e11-22. Abstract.

- Attia M, Scott A, Duchesnay A, Carpentier G, Soslowsky LJ, Huynh MB, Van Kuppevelt TH, Gossard C, Courty J, Tassoni MC, Martelly I. Alterations of overused supraspinatus tendon: a possible role of glycosaminoglycans and HARP/pleiotrophin in early tendon pathology. 2012. J Orthop Res. 30(1):61-71. Abstract.

- Destouches D, Page N, Hamma-Kourbali Y, Machi V, Chaloin O, Frechault S, Birmpas C, Katsoris P, Beyrath J, Albanese P, Maurer M, Carpentier G, Strub J.M, Van Dorsselaer A, Muller S, Bagnard D, Briand J.P. A simple approach to cancer therapy afforded by multivalent pseudopeptides that target cell-surface nucleoproteins. 2011. Cancer Research., 71(9):3296-305. Abstract.

- Blondet B, Carpentier G, Ferry A, Chatonnet A and José Courty. Localization of Butyrylcholinesterase at the Neuromuscular Junction of Normal and Acetylcholinesterase Knockout Mice. 2010. J. Histochem. Cytochem , 58(12):1075-82. Abstract.

- Carpentier G and Henault E. Protein Array Analyzer for ImageJ. 2010. 3nd ImageJ User and Developer Conference proceedings. ISBN 2-919941- 11-9 : 238-240. Abstract.

- Peltzer J, Carpentier G, Martelly I, Courty J, Keller A. Transitions towards either slow-oxidative or fast-glycolytic phenotype can be induced in the murine WTt myogenic cell line. 2010. Journal of Cellular Biochemistry. 111-1: 82-93. Abstract.

- Ouidja MO, Petit E, Kerros ME, Ikeda Y, Morin C, Carpentier G, Barritault D, Brugère-Picoux J, Deslys JP, Adjou K, Papy-Garcia D.Structure-activity studies of heparan mimetic polyanions for anti-prion therapies. 2007. Biochem Biophys Res Commun. 363: 95–100. Abstract.

- Keller A, Peltzer J, Carpentier G, Horváth I, Oláh J, Duchesnay A, Orosz F, Ovádi J : Interactions of enolase isoforms with tubulin and microtubules during myogenesis. 2007. Biochim. Biophys. Acta. 1770(6): 919-26. Abstract.

- Blondet B, Carpentier G, Ferry A, Courty J : Exogenous Pleiotrophin Applied to Lesioned Nerve Impairs Muscle Reinnervation. 2006. Neurochem. Res. 31: 907–913. Abstract.

- Blondet B, Carpentier G, Lafdil F and Courty J : Pleiotrophin cellular localization in nerve regeneration after peripheral nerve injury. 2005. J. Histochem. Cytochem, 53(8): 971–977. Abstract.

- Barbosa I, Morin C, Garcia S, Duchesnay A, Oudghir M, Jenniskens G, Miao H-Q, Guimond S, Carpentier G, Cebrian J, Caruelle J-P, Kuppevelt T-V, Turnbull J, Martelly I and Papy-Garcia D : A synthetic glycosaminoglycan mimetic (RGTA) modifies natural glycosaminoglycan species during myogenesis. 2005. J. Cell Sciences, 118: 253-264. Abstract.

- Ping L, Cebrian J, Carpentier G, Barbosa I and Barritault D : Effect of RG1192, a substituted dextran, on inflammatory response. Cell Mol Biol 2003; 49. Abstract.

- Blanquaert F, Carpentier G, Morvan F, Caruelle J-P, Barritault D and Tardieu M : RGTA modulates the healing pattern of a defect in a monolayer of osteoblastic cells by acting on both proliferation and migration. 2003. J Biomed Mater Res. Mar 1; 64A(3): 525-32. Abstract.

- Blondet B, Carpentier G, Aït-Ikhlef A, Murawsky M and Rieger F : Motoneuron morphological alterations befor and after the onset of the disease in the wobbler mouse. 2002. Brain Research 930, 53-57. Abstract.

- Desgranges P, Caruelle J-P, Carpentier G, Barritault D and Tardieu M : Beneficial use of Fibroblast Growth Factor 2 and RGTA, a new family of heparan mimics, for endothelialization of PET prosthesis. 2000. J. Biomed Mater Res (Appl Biomater) 58, 1-9. Abstract.

- Gachet Y, Carpentier G, Chousterman S : Purification of an atypical bovine interferon induced in response to heat shock in bovine cultured cells. Characterization in comparison with the classical a, b and g interferon. 1997. Biochimie 79, 43-52. Abstract.

- Lachaise F, Sommé G, Carpentier G, Granjeon E, Webster S and Baghdassarian D : A transaldolase. An enzyme implicated in crab steroidogenesis. 1996. Endocrine 5,1: 23-32. Abstract.

- Lagord C, Leibovitch M.-P, Carpentier G, Leibovitch S.-A and Martelly I : The kinase inhibitor iso-H7 stimulates rat satellite cell differentiation through a non-protein kinase C pathway by increasing myogenin expression level. 1996. Cell Biology and Toxicology 12, 177-185. Abstract.

- Blanquaret F, Saffar J.L., Colombier M.L, Carpentier G, Barritault D and Caruelle J.P : Heparan like molecules induce the repair of skull defects. Bone 17,6: 499-506. Abstract.

- Aamiri A, Mobarek A, Carpentier G, Barritault D, Gautron J: Effect of a subsituted dextran on reinnervation during regeneration of adult rat skeletal muscle. 1995. C.R Acad. Sci. Paris. 318: 1037-43. Abstract.

- Lagord C, Carpentier G, Leibovitch M-P and Martelly I : Stimulation of rat satellite cell myogenesis by inhibitors of Ser/Thr protein kinases. 1993. Neuromusc. Disord. 3: 379-38. Abstract.

- Lagord C, Carpentier G, Moraczewski J, Pons G, Climent F and Martelly I : Satellite cell myogenesis is highly stimulated by the kinase inhibitor iso-H7: comparison with HA1004 and staurosporine effects. 1993. Biochem. Bioph. Res. Commun. 191: 928-936. Abstract.

- Lachaise F, Goudeau M, Carpentier G, Saidi B and Goudeau H: Eyestalk ablation of female crabs: effect on egg characteristics. 1992. J. Exp. Zool. 261: 86-96. Abstract.

- Carpentier G : Cryoconservation par immersion directe dans l’azote liquide de cellules d’interêt aquacole. 1991. SANOFI-Aquaculture.

- Carpentier G et Goguenheim J : Cryoconservation des spermatophores et des embryons de crevettes pénéides. 1990. IFREMER.

- Goudeaux M, Lachaise F, Carpentier G and Goxe B : High titers of ecdysteroids are associated with the secretory process of embryonic envelopes in the european lobster. 1990. Tissue and Cell. 22/3 : 269-281. Abstract.

- Lachaise F, Carpentier G, Somme-Martin G and Colardeau J: Ecdysteroid synthesis by crab Y-organs. 1989. J. Exp. Zool. 252 : 283-292. Asbtract

- Rabilloud T, Carpentier G, Tarroux P: Improvement and simplification of lowbackground silver staining of proteins by using sodium dithionite. 1988. Electrophoresis 6: 288-291. Abstract.

logoij ImageJ ( is a public domain Java image processing program inspired by NIH Image for the Macintosh. It runs, either as an online applet or as a downloadable application, on any computer with a Java 1.1 or later virtual machine. Downloadable distributions are available for Windows, Mac OS, Mac OS X and Linux. The author, Wayne Rasband (, is at the Research Services Branch, National Institute of Mental Health, Bethesda, Maryland, USA.
Gilles Carpentier, Faculte des Sciences et Technologie,
Universite Paris Est Creteil Val-de-Marne, France.

Special thanks to Alessandra Albano for the English correction of these sites.
Computer Data Acquisition
for Biochemistry Practice Works
Image analysis tools in biology
and biochemistry using ImageJ