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Angiogenesis Analyzer for ImageJ

Saturday 20 October 2012, by Gilles Carpentier

  Table of contents  

 References:

[1] Carpentier G, Berndt S, Ferratge S, Rasband W, Cuendet M, Uzan G, Albanese P. Angiogenesis Analyzer for ImageJ - A comparative morphometric analysis of "Endothelial Tube Formation Assay" and "Fibrin Bead Assay". Sci Rep. 2020 Jul 14;10(1):11568. doi: 10.1038/s41598-020-67289-8. Abstract.

[2] Gilles Carpentier. ImageJ contribution: Angiogenesis Analyzer. ImageJ News, 5 October 2012.

[3] Carpentier G, Martinelli M, Courty J and Cascone I. Angiogenesis Analyzer for ImageJ. 4th ImageJ User and Developer Conference proceedings. Mondorf-les-Bains, Luxembourg. ISBN: 2-919941-18-6 : 198-201, 2012.


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(883)    Sanen, K.; Martens, W.; Georgiou, M.; Ameloot, M.; Lambrichts, I.; Phillips, J. Engineered Neural Tissue with Schwann Cell Differentiated Human Dental Pulp Stem Cells: Potential for Peripheral Nerve Repair? J Tissue Eng Regen Med 2017, 11 (12), 3362–3372. https://doi.org/10.1002/term.2249.


(884)    Lee, J. Y.; McMurtry, S. A.; Stevens, T. Single Cell Cloning Generates Lung Endothelial Colonies with Conserved Growth, Angiogenic, and Bioenergetic Characteristics. Pulm Circ 2017, 7 (4), 777–792. https://doi.org/10.1177/2045893217731295.


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(890)    Tiwari, A.; Pattnaik, N.; Mohanty Jaiswal, A.; Dixit, M. Increased FSHD Region Gene1 Expression Reduces in Vitro Cell Migration, Invasion, and Angiogenesis, Ex Vivo Supported by Reduced Expression in Tumors. Biosci Rep 2017, 37 (5), BSR20171062. https://doi.org/10.1042/BSR20171062.


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(921)    Kobayashi, T.; Kakizaki, I.; Nozaka, H.; Nakamura, T. Chondroitin Sulfate Proteoglycans from Salmon Nasal Cartilage Inhibit Angiogenesis. Biochem Biophys Rep 2017, 9, 72–78. https://doi.org/10.1016/j.bbrep.2016.11.009.


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(930)    Troncoso, F.; Acurio, J.; Herlitz, K.; Aguayo, C.; Bertoglia, P.; Guzman-Gutierrez, E.; Loyola, M.; Gonzalez, M.; Rezgaoui, M.; Desoye, G.; Escudero, C. Gestational Diabetes Mellitus Is Associated with Increased Pro-Migratory Activation of Vascular Endothelial Growth Factor Receptor 2 and Reduced  Expression of Vascular Endothelial Growth Factor Receptor 1. PLoS One 2017, 12 (8), e0182509. https://doi.org/10.1371/journal.pone.0182509.


(931)    Takeuchi, Y.; Ueno, K.; Mizoguchi, T.; Samura, M.; Harada, T.; Oga, A.; Murata, T.; Hosoyama, T.; Morikage, N.; Hamano, K. Ulcer Healing Effect of Autologous Mixed Sheets Consisting of Fibroblasts and Peripheral Blood Mononuclear Cells in Rabbit Ischemic Hind Limb. Am J Transl Res 2017, 9 (5), 2340–2351.


(932)    Soltani, A.; Lebrun, S.; Carpentier, G.; Zunino, G.; Chantepie, S.; Maïza, A.; Bozzi, Y.; Desnos, C.; Darchen, F.; Stettler, O. Increased Signaling by the Autism-Related Engrailed-2 Protein Enhances Dendritic Branching and Spine Density, Alters Synaptic Structural Matching, and Exaggerates  Protein Synthesis. PLoS One 2017, 12 (8), e0181350. https://doi.org/10.1371/journal.pone.0181350.


(933)    Olivera-Severo, D.; Uberti, A. F.; Marques, M. S.; Pinto, M. T.; Gomez-Lazaro, M.; Figueiredo, C.; Leite, M.; Carlini, C. R. A New Role for Helicobacter Pylori Urease: Contributions to Angiogenesis. Front Microbiol 2017, 8, 1883. https://doi.org/10.3389/fmicb.2017.01883.


(934)    Mohr, T.; Haudek-Prinz, V.; Slany, A.; Grillari, J.; Micksche, M.; Gerner, C. Proteome Profiling in IL-1β and VEGF-Activated Human Umbilical Vein Endothelial Cells Delineates the Interlink between Inflammation and Angiogenesis. PLoS One 2017, 12 (6), e0179065. https://doi.org/10.1371/journal.pone.0179065.


(935)    Joladarashi, D.; Krishnamurthy, P. Assessment of MiRNA Regulation of Endothelial Progenitor Cell Mediated Angiogenesis. Methods Mol Biol 2017, 1553, 305–314. https://doi.org/10.1007/978-1-4939-6756-8_24.


(936)    Ho, R. X.-Y. MINAR Is a Novel NOTCH-2 Interacting Protein That Regulates NOTCH-2 Activation and Angiogenesis, Boston University, 2017.


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(939)    Chua, J. S.; Tran, V. M.; Kalita, M.; Quintero, M. V.; Antelope, O.; Muruganandam, G.; Saijoh, Y.; Kuberan, B. A Glycan-Based Approach to Therapeutic Angiogenesis. PLoS One 2017, 12 (8), e0182301. https://doi.org/10.1371/journal.pone.0182301.


(940)    Wang, Y. H. W.; Meyer, R. D.; Bondzie, P. A.; Jiang, Y.; Rahimi, I.; Rezazadeh, K.; Mehta, M.; Laver, N. M. V.; Costello, C. E.; Rahimi, N. IGPR-1 Is Required for Endothelial Cell-Cell Adhesion and Barrier Function. J Mol Biol 2016, 428 (24 Pt B), 5019–5033. https://doi.org/10.1016/j.jmb.2016.11.003.


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(942)    Levy, S.; Feduska, J. M.; Sawant, A.; Gilbert, S. R.; Hensel, J. A.; Ponnazhagan, S. Immature Myeloid Cells Are Critical for Enhancing Bone Fracture Healing through Angiogenic Cascade. Bone 2016, 93, 113–124. https://doi.org/10.1016/j.bone.2016.09.018.


(943)    Moerkamp, A. T.; Lodder, K.; van Herwaarden, T.; Dronkers, E.; Dingenouts, C. K. E.; Tengström, F. C.; van Brakel, T. J.; Goumans, M.-J.; Smits, A. M. Human Fetal and Adult Epicardial-Derived Cells: A Novel Model to Study Their Activation. Stem Cell Res Ther 2016, 7 (1), 174. https://doi.org/10.1186/s13287-016-0434-9.


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(945)    Espana-Serrano, L.; Chougule, M. B. Enhanced Anticancer Activity of PF-04691502, a Dual PI3K/MTOR Inhibitor, in Combination With VEGF SiRNA Against Non-Small-Cell Lung Cancer. Mol Ther Nucleic Acids 2016, 5 (11), e384. https://doi.org/10.1038/mtna.2016.90.


(946)    Olivieri, M.; Amata, E.; Vinciguerra, S.; Fiorito, J.; Giurdanella, G.; Drago, F.; Caporarello, N.; Prezzavento, O.; Arena, E.; Salerno, L.; Rescifina, A.; Lupo, G.; Anfuso, C. D.; Marrazzo, A. Antiangiogenic Effect of (±)-Haloperidol Metabolite II Valproate Ester [(±)-MRJF22] in Human Microvascular Retinal Endothelial Cells. J Med Chem 2016, 59 (21), 9960–9966. https://doi.org/10.1021/acs.jmedchem.6b01039.


(947)    Loomans, H. A.; Arnold, S. A.; Quast, L. L.; Andl, C. D. Esophageal Squamous Cell Carcinoma Invasion Is Inhibited by Activin A in ACVRIB-Positive Cells. BMC Cancer 2016, 16 (1), 873. https://doi.org/10.1186/s12885-016-2920-y.


(948)    Yang, Y.; Zhang, J.; Xia, T.; Li, G.; Tian, T.; Wang, M.; Wang, R.; Zhao, L.; Yang, Y.; Lan, K.; Zhou, W. MicroRNA-210 Promotes Cancer Angiogenesis by Targeting Fibroblast Growth Factor Receptor-like 1 in Hepatocellular Carcinoma. Oncol Rep 2016, 36 (5), 2553–2562. https://doi.org/10.3892/or.2016.5129.


(949)    Koster, K. P.; Thomas, R.; Morris, A. W. J.; Tai, L. M. Epidermal Growth Factor Prevents Oligomeric Amyloid-β Induced Angiogenesis Deficits in Vitro. J Cereb Blood Flow Metab 2016, 36 (11), 1865–1871. https://doi.org/10.1177/0271678X16669956.


(950)    Gong, Y.; Shao, Z.; Fu, Z.; Edin, M. L.; Sun, Y.; Liegl, R. G.; Wang, Z.; Liu, C.-H.; Burnim, S. B.; Meng, S. S.; Lih, F. B.; SanGiovanni, J. P.; Zeldin, D. C.; Hellström, A.; Smith, L. E. H. Fenofibrate Inhibits Cytochrome P450 Epoxygenase 2C Activity to Suppress Pathological Ocular Angiogenesis. EBioMedicine 2016, 13, 201–211. https://doi.org/10.1016/j.ebiom.2016.09.025.


(951)    Sultani, A. B.; Marquez-Curtis, L. A.; Elliott, J. A. W.; McGann, L. E. Improved Cryopreservation of Human Umbilical Vein Endothelial Cells: A Systematic Approach. Sci Rep 2016, 6, 34393. https://doi.org/10.1038/srep34393.


(952)    Kir, D.; Saluja, M.; Modi, S.; Venkatachalam, A.; Schnettler, E.; Roy, S.; Ramakrishnan, S. Cell-Permeable Iron Inhibits Vascular Endothelial Growth Factor Receptor-2 Signaling and Tumor Angiogenesis. Oncotarget 2016, 7 (40), 65348–65363. https://doi.org/10.18632/oncotarget.11689.


(953)    Yiu, G.; Tieu, E.; Nguyen, A. T.; Wong, B.; Smit-McBride, Z. Genomic Disruption of VEGF-A Expression in Human Retinal Pigment Epithelial Cells Using CRISPR-Cas9 Endonuclease. Invest Ophthalmol Vis Sci 2016, 57 (13), 5490–5497. https://doi.org/10.1167/iovs.16-20296.


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(955)    Bullwinkle, E. M.; Parker, M. D.; Bonan, N. F.; Falkenberg, L. G.; Davison, S. P.; DeCicco-Skinner, K. L. Adipocytes Contribute to the Growth and Progression of Multiple Myeloma: Unraveling Obesity Related Differences in Adipocyte Signaling. Cancer Lett 2016, 380 (1), 114–121. https://doi.org/10.1016/j.canlet.2016.06.010.


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(958)    Issa, M. E.; Berndt, S.; Carpentier, G.; Pezzuto, J. M.; Cuendet, M. Bruceantin Inhibits Multiple Myeloma Cancer Stem Cell Proliferation. Cancer Biol Ther 2016, 17 (9), 966–975. https://doi.org/10.1080/15384047.2016.1210737.


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(961)    He, X.; Zeng, H.; Chen, J.-X. Ablation of SIRT3 Causes Coronary Microvascular Dysfunction and Impairs Cardiac Recovery Post Myocardial Ischemia. Int J Cardiol 2016, 215, 349–357. https://doi.org/10.1016/j.ijcard.2016.04.092.


(962)    Rudnicki, M.; Tripodi, G. L.; Ferrer, R.; Boscá, L.; Pitta, M. G. R.; Pitta, I. R.; Abdalla, D. S. P. New Thiazolidinediones Affect Endothelial Cell Activation and Angiogenesis. Eur J Pharmacol 2016, 782, 98–106. https://doi.org/10.1016/j.ejphar.2016.04.038.


(963)    Butoi, E.; Gan, A. M.; Tucureanu, M. M.; Stan, D.; Macarie, R. D.; Constantinescu, C.; Calin, M.; Simionescu, M.; Manduteanu, I. Cross-Talk between Macrophages and Smooth Muscle Cells Impairs Collagen and Metalloprotease Synthesis and Promotes Angiogenesis. Biochim Biophys Acta 2016, 1863 (7 Pt A), 1568–1578. https://doi.org/10.1016/j.bbamcr.2016.04.001.


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(965)    Luengo-Gil, G.; Calvo, M. I.; Martín-Villar, E.; Águila, S.; Bohdan, N.; Antón, A. I.; Espín, S.; Ayala de la Peña, F.; Vicente, V.; Corral, J.; Quintanilla, M.; Martínez-Martínez, I. Antithrombin Controls Tumor Migration, Invasion and Angiogenesis by Inhibition of Enteropeptidase. Sci Rep 2016, 6, 27544. https://doi.org/10.1038/srep27544.


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(967)    Flashner-Abramson, E.; Klein, S.; Mullin, G.; Shoshan, E.; Song, R.; Shir, A.; Langut, Y.; Bar-Eli, M.; Reuveni, H.; Levitzki, A. Targeting Melanoma with NT157 by Blocking Stat3 and IGF1R Signaling. Oncogene 2016, 35 (20), 2675–2680. https://doi.org/10.1038/onc.2015.229.


(968)    Fortunato, T. M.; Beltrami, C.; Emanueli, C.; De Bank, P. A.; Pula, G. Platelet Lysate Gel and Endothelial Progenitors Stimulate Microvascular Network Formation in Vitro: Tissue Engineering Implications. Sci Rep 2016, 6, 25326. https://doi.org/10.1038/srep25326.


(969)    Wang, Y.; Molin, D. G. M.; Sevrin, C.; Grandfils, C.; van den Akker, N. M. S.; Gagliardi, M.; Knetsch, M. L.; Delhaas, T.; Koole, L. H. In Vitro and in Vivo Evaluation of Drug-Eluting Microspheres Designed for Transarterial Chemoembolization Therapy. Int J Pharm 2016, 503 (1–2), 150–162. https://doi.org/10.1016/j.ijpharm.2016.03.002.


(970)    Jani, A.; Shaikh, F.; Barton, S.; Willis, C.; Banerjee, D.; Mitchell, J.; Hernandez, S. L.; Hei, T.; Kadenhe-Chiweshe, A.; Yamashiro, D. J.; Connolly, E. P. High-Dose, Single-Fraction Irradiation Rapidly Reduces Tumor Vasculature and Perfusion in a Xenograft Model of Neuroblastoma. Int J Radiat Oncol Biol Phys 2016, 94 (5), 1173–1180. https://doi.org/10.1016/j.ijrobp.2015.12.367.


(971)    Boratkó, A.; Veréb, Z.; Petrovski, G.; Csortos, C. TIMAP-Protein Phosphatase 1-Complex Controls Endothelin-1 Production via ECE-1 Dephosphorylation. Int J Biochem Cell Biol 2016, 73, 11–18. https://doi.org/10.1016/j.biocel.2016.01.016.


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(978)    Abdel-Sayed, P.; Kaeppeli, A.; Siriwardena, T.; Darbre, T.; Perron, K.; Jafari, P.; Reymond, J.-L.; Pioletti, D. P.; Applegate, L. A. Anti-Microbial Dendrimers against Multidrug-Resistant P. Aeruginosa Enhance the Angiogenic Effect of Biological Burn-Wound Bandages. Sci Rep 2016, 6, 22020. https://doi.org/10.1038/srep22020.


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(980)    Lee, J. B.; Balikov, D. A.; Yang, J. W.; Kim, K. S.; Park, H. K.; Kim, J. K.; Kwon, I. K.; Bellan, L. M.; Sung, H.-J. Cationic Nanocylinders Promote Angiogenic Activities of Endothelial Cells. Polymers (Basel) 2016, 8 (1), 15. https://doi.org/10.3390/polym8010015.


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(987)    Tanaka, Y.; Shirasawa, B.; Takeuchi, Y.; Kawamura, D.; Nakamura, T.; Samura, M.; Nishimoto, A.; Ueno, K.; Morikage, N.; Hosoyama, T.; Hamano, K. Autologous Preconditioned Mesenchymal Stem Cell Sheets Improve Left Ventricular Function in a Rabbit Old Myocardial Infarction Model. Am J Transl Res 2016, 8 (5), 2222–2233.


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 Code:

The code in the following frame is available in full page on the ImageJ web site at this link.


Citing this work:

You can use a formula similar to that found by Rahimi et al. in the "Material and Methods" of this article, or use in references a formula like "Carpentier G., Angiogenesis Analyzer for ImageJ (2012) available online: http://imagej.nih.gov/ij/macros/toolsets/Angiogenesis%20Analyzer.txt" or alternatively, this reference:

Carpentier G, Martinelli M, Courty J and Cascone I. Angiogenesis Analyzer for ImageJ. 4th ImageJ User and Developer Conference proceedings. Mondorf-les-Bains, Luxembourg. ISBN: 2-919941-18-6 : 198-201, 2012.

logoij ImageJ (http://rsb.info.nih.gov/ij/) is a public domain Java image processing program inspired by NIH Image for the Macintosh. It runs, either as an online applet or as a downloadable application, on any computer with a Java 1.1 or later virtual machine. Downloadable distributions are available for Windows, Mac OS, Mac OS X and Linux. The author, Wayne Rasband (wayne@codon.nih.gov), is at the Research Services Branch, National Institute of Mental Health, Bethesda, Maryland, USA.
Gilles Carpentier, Faculte des Sciences et Technologie,
Universite Paris Est Creteil Val-de-Marne, France.

Special thanks to Alessandra Albano for the English correction of these sites.
Computer Data Acquisition
for Biochemistry Practice Works

Image.Bio.Methods@free.fr
Image analysis tools in biology
and biochemistry using ImageJ